Jennifer Fung, PhD

An Unsupervised Learning Approach to Resolve Phenotype to Genotype Mapping in Budding Yeasts Vacuoles.

Image Analysis and Processing – ICIAP 2023

Vito Paolo Pastore, Paolo Didier Alfano, Ashwini Oke, Sara Capponi, Daniel Eltanan, Xavier Woodruff-Madeira, Anita Nguyen, Jennifer Carol Fung, Simone Bianco

Efficient unsupervised learning of biological images with compressed deep features.

Image and Vision Computing

Vito Paolo Pastore, Massimiliano Ciranni, Simone Bianco, Jennifer Carol Fung, Vittorio Murino, Francesca Odone

Homologous chromosome recognition via nonspecific interactions.

bioRxiv : the preprint server for biology

Marshall WF, Fung JC

Kinetic analysis of synaptonemal complex dynamics during meiosis of yeast Saccharomyces cerevisiae reveals biphasic growth and abortive disassembly.

Frontiers in Cell and Developmental Biology

Pollard MG, Rockmill B, Oke A, Anderson CM, Fung JC

Modeling cell biological features of meiotic chromosome pairing to study interlock resolution.

PLoS computational biology

Navarro EJ, Marshall WF, Fung JC

A Role for Synaptonemal Complex in Meiotic Mismatch Repair.

Genetics

Karen Voelkel-Meiman, Ashwini Oke, Arden Feil, Alexander Shames, Jennifer Fung, Amy J MacQueen

Steroid hormones regulate genome-wide epigenetic programming and gene transcription in human endometrial cells with marked aberrancies in endometriosis.

PLoS genetics

Houshdaran S, Oke AB, Fung JC, Vo KC, Nezhat C, Giudice LC

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis.

Molecular cell

Wild P, Susperregui A, Piazza I, Dörig C, Oke A, Arter M, Yamaguchi M, Hilditch AT, Vuina K, Chan KC, Gromova T, Haber JE, Fung JC, Picotti P, Matos J

Modeling meiotic chromosome pairing: a tug of war between telomere forces and a pairing-based Brownian ratchet leads to increased pairing fidelity.

Physical biology

Marshall WF, Fung JC

Regulated Crossing-Over Requires Inactivation of Yen1/GEN1 Resolvase during Meiotic Prophase I.

Developmental cell

Arter M, Hurtado-Nieves V, Oke A, Zhuge T, Wettstein R, Fung JC, Blanco MG, Matos J

Kinetochores: Importance of Being Fashionably Late.

Cell systems

Fung JC

In Vivo Imaging of Budding Yeast Meiosis.

Methods in molecular biology (Clifton, N.J.)

Pollard MG, Fung JC

Modeling meiotic chromosome pairing: nuclear envelope attachment, telomere-led active random motion, and anomalous diffusion.

Physical biology

Marshall WF, Fung JC

DAZL and CPEB1 regulate mRNA translation synergistically during oocyte maturation.

Development

Joao P. Sousa Martins, Xueqing Liu, Ashwini Oke, Ripla Arora, Federica Franciosi, Stephan Viville, Diana J. Laird, Jennifer C. Fung, Marco Conti

DAZL and CPEB1 regulate mRNA translation synergistically during oocyte maturation.

Journal of cell science

Sousa Martins JP, Liu X, Oke A, Arora R, Franciosi F, Viville S, Laird DJ, Fung JC, Conti M

Modeling meiotic chromosome pairing: nuclear envelope attachment, telomere-led active random motion, and anomalous diffusion

Journal of Physical Biology

Marshall WM, Fung JC

The kinetochore prevents centromere-proximal crossover recombination during meiosis.

eLife

Vincenten N, Kuhl LM, Lam I, Oke A, Kerr AR, Hochwagen A, Fung J, Keeney S, Vader G, Marston AL

Reduced Crossover Interference and Increased ZMM-Independent Recombination in the Absence of Tel1/ATM.

PLoS genetics

Anderson CM, Oke A, Yam P, Zhuge T, Fung JC

Follicle dynamics and global organization in the intact mouse ovary.

Developmental biology

Faire M, Skillern A, Arora R, Nguyen DH, Wang J, Chamberlain C, German MS, Fung JC, Laird DJ

Controlling meiotic recombinational repair - specifying the roles of ZMMs, Sgs1 and Mus81/Mms4 in crossover formation.

PLoS genetics

Oke A, Anderson CM, Yam P, Fung JC

Down-regulation of Rad51 activity during meiosis in yeast prevents competition with Dmc1 for repair of double-strand breaks.

PLoS genetics

Liu Y, Gaines WA, Callender T, Busygina V, Oke A, Sung P, Fung JC, Hollingsworth NM

High throughput sequencing reveals alterations in the recombination signatures with diminishing Spo11 activity.

PLoS genetics

Rockmill B, Lefrançois P, Voelkel-Meiman K, Oke A, Roeder GS, Fung JC

High-resolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio.

Proceedings of the National Academy of Sciences of the United States of America

Arigovindan M, Fung JC, Elnatan D, Mennella V, Chan YH, Pollard M, Branlund E, Sedat JW, Agard DA

Mitochondrial network size scaling in budding yeast.

Science (New York, N.Y.)

Rafelski SM, Viana MP, Zhang Y, Chan YH, Thorn KS, Yam P, Fung JC, Li H, Costa Lda F, Marshall WF

ReCombine: a suite of programs for detection and analysis of meiotic recombination in whole-genome datasets.

PloS one

Anderson CM, Chen SY, Dimon MT, Oke A, DeRisi JL, Fung JC

Mapping of crossover sites using DNA microarrays.

Methods in molecular biology (Clifton, N.J.)

Chen SY, Fung JC

Global analysis of the meiotic crossover landscape.

Developmental cell

Chen SY, Tsubouchi T, Rockmill B, Sandler JS, Richards DR, Vader G, Hochwagen A, Roeder GS, Fung JC

Imposition of crossover interference through the nonrandom distribution of synapsis initiation complexes.

Cell

Fung JC, Rockmill B, Odell M, Roeder GS

The Sgs1 helicase regulates chromosome synapsis and meiotic crossing over.

Current biology : CB

Rockmill B, Fung JC, Branda SS, Roeder GS

Homologous DNA Interactions in Interphase: Spatial Organization of Interphase Nucleus.

Encyclopedia of Life Sciences

Jennifer C Fung, John W Sedat, Wallace F Marshall

Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations.

The Journal of cell biology

Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW

New Insights Into the Three-Dimensional Structure of the Nucleus and Chromosomes.

Microscopy and Microanalysis

J. Sedat, W. Marshall, A. Dernburg, J. Fung, D. Agard

Microstructural Analysis of a Cubic Bicontinuous Morphology in a Neat SIS Triblock Copolymer.

Macromolecules

Jonathan H. Laurer, Damian A. Hajduk, Jennifer C. Fung, John W. Sedat, Steven D. Smith, Sol M. Gruner, David A. Agard, Richard J. Spontak

Deconstructing the nucleus: global architecture from local interactions.

Current opinion in genetics & development

Marshall WF, Fung JC, Sedat JW

From Micelles to Randomly Connected, Bilayered Membranes in Dilute Block Copolymer Blends.

Langmuir

Jonathan H. Laurer, Jennifer C. Fung, John W. Sedat, Steven D. Smith, Jon Samseth, Kell Mortensen, David A. Agard, Richard J. Spontak

Phase Behavior of Complex Diblock Copolymer Blends: A Transmission Electron Microscopy Study.

J.C. Fung, L. Kane, S.D. Smith, J.W. Sedat, D.A. Agard, R.J. Spontak

Direct measurement of chromatin diffusion and constraint in living cells using a gfp-lac repressor fusion protein.

Microscopy and Microanalysis

W.F. Marshall, A.F. Straight, A. Murray, J.C. Fung, J. Marko, D.A. Agard, J.W. Sedat

Perturbation of nuclear architecture by long-distance chromosome interactions.

Cell

Dernburg AF, Broman KW, Fung JC, Marshall WF, Philips J, Agard DA, Sedat JW

Architecture-Induced Phase Immiscibility in a Diblock/Multiblock Copolymer Blend.

Macromolecules

Richard J. Spontak, Jennifer C. Fung, Michael B. Braunfeld, John W. Sedat, David A. Agard, Arman Ashraf, Steven D. Smith

Phase Behavior of Ordered Diblock Copolymer Blends: Effect of Compositional Heterogeneity.

Macromolecules

Richard J. Spontak, Jennifer C. Fung, Michael B. Braunfeld, John W. Sedat, David A. Agard, Lisaleigh Kane, Steven D. Smith, Michael M. Satkowski, Arman Ashraf, Damian A. Hajduk, Sol M. Gruner